09:00 – 09:30 | Registration |
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09:30 – 09:40 | Iain MacLaren & Angelica Vittori Oxford Nanopore Technologies |
Introduction and Welcome |
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09:40 – 10:10 | Iain MacLaren Oxford Nanopore Technologies |
Nanopore sequencing technology |
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10:10 – 11:50 | Peter Sseruwagi Mikocheni Agricultural Research Institute Laura Boykin University of Western Australia |
Sequencing cassava viruses in the field | |
11:50 – 12:30 | Clara Yona Sokoine University of Agriculture |
Using Nanopore MinION sequencing in African swine fever virus (ASFV) genomics | |
12:30 – 14:00 | Lunch and live demos |
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14:00 – 14:45 | Joseph Ndunguru Tanzania Agricultural Research Institute |
Translating upstream science into impact and benefit for the poor | |
14:45 – 15:30 | Charles Kayuki Mikocheni Agricultural Research Institute |
Nanopore sequencing; practical experience in Tanzania | |
15:30 – 16:45 | Angelica Vittori Oxford Nanopore Technologies |
Kits, Protocols and getting started | |
17:00 – 18:00 | Networking |
Day 2: Workshop (the workshop has limited availability due to lab space of 20 people)
09:00 – 09:30 | Registration |
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09:30 – 09:45 | Introduction and Welcome |
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09:45 – 10:30 | Planning your experiment 1: input material | ||
10:30 – 11:00 | Coffee break | ||
11:00 – 12:00 | Planning your experiment 2: DNA kits, RNA kits, barcoding options, washing and re-using a flow cell. | ||
12:30 – 12:45 | Live demo flow cell loading | ||
12:30 – 14:00 | Lunch |
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14:00 – 15:15 | Rapid control experiment (wet lab) | ||
15:15 – 16:30 | Software introduction: MinKNOW, Albacore, Epi2Me, Data file structure | ||
16:30 – 17:30 | Networking |